inst/CITATION
Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT (2017). “Reproducible RNA-seq analysis using recount2.” Nature Biotechnology. doi:10.1038/nbt.3838, http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.
@Article{,
title = {Reproducible RNA-seq analysis using recount2},
author = {Leonardo Collado-Torres and Abhinav Nellore and Kai Kammers and Shannon E. Ellis and Margaret A. Taub and Kasper D. Hansen and Andrew E. Jaffe and Ben Langmead and Jeffrey T. Leek},
year = {2017},
journal = {Nature Biotechnology},
doi = {10.1038/nbt.3838},
url = {http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html},
}
Collado-Torres L, Nellore A, Jaffe AE (2017). “recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations].” F1000Research. doi:10.12688/f1000research.12223.1, https://f1000research.com/articles/6-1558/v1.
@Article{,
title = {recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]},
author = {Leonardo Collado-Torres and Abhinav Nellore and Andrew E. Jaffe},
year = {2017},
journal = {F1000Research},
doi = {10.12688/f1000research.12223.1},
url = {https://f1000research.com/articles/6-1558/v1},
}
Ellis SE, Collado-Torres L, Jaffe AE, Leek JT (2018). “Improving the value of public RNA-seq expression data by phenotype prediction.” Nucl. Acids Res.. doi:10.1093/nar/gky102, https://doi.org/10.1093/nar/gky102.
@Article{,
title = {Improving the value of public RNA-seq expression data by phenotype prediction},
author = {Shannon E. Ellis and Leonardo Collado-Torres and Andrew E. Jaffe and Jeffrey T. Leek},
year = {2018},
journal = {Nucl. Acids Res.},
doi = {10.1093/nar/gky102},
url = {https://doi.org/10.1093/nar/gky102},
}
Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT (2024). Explore and download data from the recount project. doi:10.18129/B9.bioc.recount, https://github.com/leekgroup/recount - R package version 1.31.2, http://www.bioconductor.org/packages/recount.
@Manual{,
title = {Explore and download data from the recount project},
author = {Leonardo Collado-Torres and Abhinav Nellore and Kai Kammers and Shannon E. Ellis and Margaret A. Taub and Kasper D. Hansen and Andrew E. Jaffe and Ben Langmead and Jeffrey T. Leek},
year = {2024},
url = {http://www.bioconductor.org/packages/recount},
note = {https://github.com/leekgroup/recount - R package version 1.31.2},
doi = {10.18129/B9.bioc.recount},
}
Frazee AC, Langmead B, Leek JT (2011). “ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets.” BMC Bioinformatics. doi:10.1186/1471-2105-12-449, https://doi.org/10.1186/1471-2105-12-449.
@Article{,
title = {ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets},
author = {Alyssa C. Frazee and Ben Langmead and Jeffrey T. Leek},
year = {2011},
journal = {BMC Bioinformatics},
doi = {10.1186/1471-2105-12-449},
url = {https://doi.org/10.1186/1471-2105-12-449},
}
Razmara A, Ellis SE, Sokolowski DJ, Davis S, Wilson MD, Leek JT, Jaffe AE, Collado-Torres L (2019). “recount-brain: a curated repository of human brain RNA-seq datasets metadata.” bioRxiv. doi:10.1101/618025, https://doi.org/10.1101/618025.
@Article{,
title = {recount-brain: a curated repository of human brain RNA-seq datasets metadata},
author = {Ashkaun Razmara and Shannon E. Ellis and Dustin J. Sokolowski and Sean Davis and Michael D. Wilson and Jeffrey T. Leek and Andrew E. Jaffe and Leonardo Collado-Torres},
year = {2019},
journal = {bioRxiv},
doi = {10.1101/618025},
url = {https://doi.org/10.1101/618025},
}
Imada E, Sanchez DF, Collado-Torres L, Wilks C, Matam T, Dinalankara W, Stupnikov A, Lobo-Pereira F, Yip C, Yasuzawa K, Kondo N, Itoh M, Suzuki H, Kasukawa T, Hon CC, de Hoon MJ, Shin JW, Carninci P, Jaffe AE, Leek JT, Favorov A, Franco GR, Langmead B, Marchionni L (2020). “Recounting the FANTOM CAGE–Associated Transcriptome.” Genome Research. doi:10.1101/gr.254656.119, https://doi.org/10.1101/gr.254656.119.
@Article{,
title = {Recounting the FANTOM CAGE–Associated Transcriptome},
author = {Eddie-Luidy Imada and Diego Fernando Sanchez and Leonardo Collado-Torres and Christopher Wilks and Tejasvi Matam and Wikum Dinalankara and Aleksey Stupnikov and Francisco Lobo-Pereira and Chi-Wai Yip and Kayoko Yasuzawa and Naoto Kondo and Masayoshi Itoh and Harukazu Suzuki and Takeya Kasukawa and Chung Chau Hon and Michiel JL {de Hoon} and Jay W Shin and Piero Carninci and Andrew E. Jaffe and Jeffrey T. Leek and Alexander Favorov and Glória R Franco and Ben Langmead and Luigi Marchionni},
year = {2020},
journal = {Genome Research},
doi = {10.1101/gr.254656.119},
url = {https://doi.org/10.1101/gr.254656.119},
}